Abstract: In this paper, by using the analytic hierarchy process (AHP), the comprehensive evaluation index system of Taiwan farmers' entrepreneurial parks was constructed to empirically analyze the 6 national Taiwan farmers' entrepreneurial parks in Fujian. The results showed that:(1) The main factors affecting the evaluation of Taiwan farmers' entrepreneurial parks included the development level of ecological agriculture, the quantity of advanced technology introduced from Taiwan, the effect of promoting the regional modern agriculture development, the training number of local farmers, the output growth rate, the degree of Taiwan characteristics in the parks, the policy support, the number of Taiwan enterprises, the parks' development planning and infrastructure construction; (2) The 6 national Taiwan farmers' entrepreneurial parks in Fujian could be divided into 3 levels of development. The first level was the better development in Zhangpu and Zhangping (Yong Fu), the second was the general development in Fuqing, Xianyou and Qingliu, and the third was the slow development in Huian. Then, the relevant policy recommendations were put forward from the aspects such as the development environment, industrial integration, mechanism, exchange and cooperation, thus to provide new ideas for cross-strait agricultural cooperation.