• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

基于RNA-Seq的辣木叶转录组研究

Study on Transcriptome of Moringa oleifera Lam. Leaves Based on RNA-seq

  • 摘要: 为探讨辣木叶营养价值形成的遗传基础,采用RNA-seq对不同发育时期的辣木叶混合样品进行转录组测序,获得44 056 449个reads,共组装得到75 452条unigene,平均长度为795.69 nt,其中有15 824条unigene长度大于1 000 nt。采用公共数据库进行同源比对,共有30 847条unigene得到注释。其中,有18 277条unigenes被注释到GO数据库的52个功能组,9 689条unigene在COG数据库中得到注释。有10 130条unigene被富集到129条KEGG途径,包括碳代谢、氨基酸生物合成和氧化磷酸化途径。

     

    Abstract: To explore the genetic basis for the nutritive value of Moringa oleifera leaves, the leaves at different developmental stages were mixed and used for transcriptome sequencing in the present study. With RNA-seq, 44 056 449 reads were generated, then assembled into 75 452 unigenes with an average length of 795.69 nt. 15 824 of these unigenes were longer than 1 kb. 30 847 unigenes were annotated by a similarity search against public databases. Of these, 18 277 unigenes were assigned into 52 GO function groups and 9 689 unigenes were annotated by COG database. 10 130 unigenes were enriched into 129 KEGG pathways, including carbon metabolism, biosynthesis of amino acids and oxidative phosphorylation.

     

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