• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

兰花eIF5A基因家族鉴定与生物信息学分析

Bioinformatics and Identification of eIF5A Gene Family in Phalaenopsis equestris (Schauer) Rchb. f.

  • 摘要: 为了系统分析兰花真核翻译起始因子5A(Eukaryotic translation initiation factor 5A,eIF5A)基因家族在兰花中如何发挥作用,利用兰花基因组数据库,通过生物信息学的方法,鉴定兰花eIF5A基因家族的基因结构、编码蛋白和磷酸化位点预测,通过序列比对进行进化分析。结果表明,兰花eIF5A基因家族含有eIF5A1和eIF5A2两个基因,分别含有5个和6个外显子。MEME保守基序分析显示,兰花eIF5A1和eIF5A2蛋白均含有1个保守的DNA结合寡核苷酸结合结构域(PF01287)。磷酸化位点预测分析表明兰花eIF5A1和eIF5A2蛋白均含有大量的潜在磷酸化位点。以上结果将为今后揭示兰花eIF5A1和eIF5A2蛋白的功能提供重要的线索。

     

    Abstract: To understand the functions of eIF5A gene family in Phalaenopsis equestris, the genome database and bioinformatics were applied to obtain their gene structures, coded proteins, and predicted phosphorylation sites for analysis. The results showed that the eIF5A1 and eIF5A2 genes in P. equestris genome contained 5 and 6 extrons, respectively. The multiple alignments and motif displays rendered from the MEME method indicated that all PeeIF5A1 and PeeIF5A2 proteins contained one conserved DNA binding OB binding motif, PF01287. The phosphorylation site prediction on the proteins showed numerous sites.These results would provide the important clues for functional studies to reveal the role of PeeIF5A1 and PeeIF5A2 proteins in P.equestris.

     

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