• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

水培枝条取样法在茶树芽叶转录组测序中的可行性鉴定

Hydroponic Culturein Sample Preparation of Tea Shoots for RNA Sequencing

  • 摘要: 为充分验证水培枝条法取样在茶树芽叶转录组测序中的可行性,将水培枝条取样法与干冰取样法所取样本提取的茶树芽叶总RNA完整性、纯度、浓度、转录组测序文库以及转录组测序结果进行比较,结果表明,水培枝条取样法与干冰取样法所取样本提取的茶树芽叶总RNA完整性均良好,纯度均较高,浓度无显著差异;2种取样方法所取样本提取的总RNA品质均符合转录组测序要求,均能成功获取效果相当的转录组测序文库以及转录组测序结果。试验表明水培枝条取样具有简单、方便的特点,更适合野外取样。

     

    Abstract: Valid sampling is essential to obtain reliable transcripts of genetic information for biological studies. For RNA sequencing, the integrity, purity and concentration of total RNA as well as the cDNA libraries and transcriptome sequencingon two specimens of tea shoots sampled by using two methods were compared. One of the methods was hydroponic culture (SM1), and another, dry ice freezing (SM2). The results showed that both of them yielded RNA extractions with high integrity and purity without significant differences on the measured concentrations. They were well satisfied for the subsequent transcriptome sequencing, also capable of obtaining the equivalent cDNA libraries and RNA sequencing. However, SM1 was simpler and more convenient than SM2 in handling and operation, and particularly suitable for field sampling. Aside from being used on tea, SM1 could be applied on other crops in preparing samples for extracting RNA as well.

     

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