Abstract: Establishing farmers incubators is a significant measure to stimulate the development of modern agriculture and a useful way to increase farmers' income.Thus it's important to build a reasonable profit sharing pattern to balance the interests of stakeholder. Based on the investigation data of Fujian farmer incubators, we analyzed the influencing factors for farmers and enterprises choice on the modes of interest connection based on logistic regression analysis approach. The results showed that from the perspective of farmers, the educational background of farmers, annual per capita income of farmers, target markets, commercialization rate of agricultural products and the scale of agricultural products sold by agricultural enterprises had significant positive effects on farmers' decision-making, and the market fluctuation had significant negative effect. From the perspective of enterprises, the enterprise types, sales volume, target markets and agricultural products purchased from farmers had significant positive effects on enterprises' decision-making, and the market fluctuation had a significant negative effect.Finally, the paper puts forward some suggestions on how to establish close benefit connection mechanism between farmers and enterprises.