• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

胡椒PnPAL基因家族全基因组鉴定及表达模式分析

Whole-genome Identification and Bioinformatics of PnPAL Family in Black Peppers

  • 摘要:
      目的  胡椒瘟病是影响胡椒产量的第一大病害,胡椒苯丙氨酸解氨酶(PnPAL)基因是胡椒抗瘟病的关键基因。探明胡椒PnPAL基因家族的基本特征、进化关系及表达模式,以便于其功能研究。
      方法  通过全基因组查找、鉴定得到14条胡椒PnPAL家族成员,分别命名为PnPAL1~PnPAL14,并对这14条序列进行生物信息学及表达模式分析。
      结果  蛋白质基本信息分析显示,该家族理论等电点在5.76~9.77,分子量在7.374 41~83.431 07 kDa。有7条胡椒的PnPAL基因含有8个motif和PLN02457保守结构域,该7条胡椒PnPAL家族成员被进一步鉴定为胡椒PnPAL家族成员。胡椒PnPAL家族成员含有诸多胁迫响应元件,特别是水杨酸、茉莉酸甲酯等与抵抗病原入侵的顺式作用元件。胡椒的PnPAL基因位于系统发生树基部位置,表明胡椒的PnPAL基因较为古老,与胡椒的系统地位相似。表达模式分析显示,PnPAL10在受病原诱导后基本呈上调趋势,表明PnPAL10可能是胡椒抗瘟病的关键基因。
      结论  对胡椒PnPAL基因家族开展了生物信息学及表达模式分析,证明其在抗瘟病中的潜在作用,筛选到关键家族成员PnPAL3。

     

    Abstract:
      Objective  Basic characteristics and evolutional relationship on the phenylpropane metabolic pathway associated with the pepper blast disease that ill-affects the cultivation and production of the globally important spice, black peppers, were studied.
      Method  The phenylpropane metabolic pathway was believed to be key to the blast resistance of black peppers, and phenylalanine ammonialyase (PAL) to be the crucial, rate-limiting enzyme in the pathway. Hence, based on the transcriptomics of a resistant black pepper germplasm the sequences of 14 PALs were identified and named PnPAL1-PnPAL14. Their bioinformatics and expression patterns were analyzed.
      Result  The gene family had a theoretical isoelectric point between pH 5.76 and 9.77 with a molecular weight between 7.37441 kDa and 83.43107 kDa. Seven of the identified PnPALs contained 8 motifs and PLN02457 conserved domains. They belonged to the PnPAL family that consisted of many stress response elements, especially salicylic acid, methyl jasmonate, and other cis-acting elements, which are known to resist the pathogenic invasion. The PnPALs were located at the base of the phylogenetic tree, being relatively old and holding a status like black peppers. PnPAL10 expressed in an up-regulation trend after a pathogenic induction suggesting a close relation of the gene to the blast resistance of the plant.
      Conclusion  A critical role the PnPAL family played in the blast resistance of black peppers was positively identified.

     

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