• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

香蕉GDSL脂肪酶基因家族全基因组鉴定与表达分析

Genome-wide Identification and Expressions of Banana GDSL Lipase Gene Family

  • 摘要:
      目的  揭示香蕉GDSL脂肪酶基因家族(MaGDSL)序列特征及其在香蕉生长发育过程中的潜在功能。
      方法  利用生物信息学方法对MaGDSL进行全基因组鉴定,分析其染色体、启动子顺式作用元件和转录因子结合位点(TFBS)的分布情况以及编码蛋白的理化性质、基因结构、保守基序和系统进化关系,并基于转录组数据库分析MaGDSLs在高温(45 ℃)/低温 (4 ℃)处理的叶片、枯萎病菌 FocTR4侵染的根系以及自然成熟/乙烯催熟的不同成熟阶段的果实中的表达模式,同时利用实时荧光定量PCR(qRT-PCR)分析部分MaGDSL成员在花粉中的表达情况。
      结果  香蕉A基因组中有76个MaGDSL成员,分布于11个染色体上,可分为9个亚家族,各成员编码区长度为1014~ 2193 bp,其中有5个成员含有不同数量的转录本;多数MaGDSL成员包含5个外显子和4个内含子,编码蛋白具有信号肽且主要定位在内外膜上;启动子区存在多种植物激素和逆境胁迫相关响应元件以及22种TFBSs;MaGDSLs中有3个串联重复基因簇位于4、8号染色体,6个串联重复基因对分别位于1、6、7、8、9和10号染色体上,22对片段重复基因分布在除11号染色体外的所有染色体上。MaGDSLs在香蕉叶片和根部的表达水平差异较大,且个别成员受高、低温胁迫以及枯萎病菌调控,其中5个成员(MaGDSL4-5、8-1、8-12、9-4、9-5)受高、低温胁迫抑制表达,而MaGDSL2-1MaGDSL6-8受高、低温胁迫诱导表达,MaGDSL4-1MaGDSL11-1受低温和FocTR4调控,MaGDSL5~8仅响应低温胁迫,其中MaGDSL2-2MaGLP10-5对各种处理均有响应,而MaGDSL1-1在根系和花粉中均有高表达。
      结论  MaGDSLs可能在香蕉生长发育过程中发挥重要作用,同时部分成员特异响应生物和非生物胁迫。

     

    Abstract:
      Objective  Sequences and functions of banana GDSL lipase gene family (MaGDSL) were studied.
      Methods  Bioinformatics was applied to identify the genomes, analyze the distributions of chromosomes, promoter cis-acting elements, and transcription factor binding sites (TFBS), and determine the physicochemical properties, gene structure, conserved motifs, and phylogenetic relationships of the encoded proteins of the MaGDSL family. Based on the transcriptome database, the expressions of MaGDSLs in the high (45 ℃)- or low temperature (4 ℃)-treated leaves, FocTR4-infested roots, and the natural or ethylene ripened fruits were measured. And qRT-PCR was employed to obtain the expressions of MaGDSL members in pollen.
      Results  The banana A genome had 76 MaGDSLs of 9 subfamilies distributed on 11 chromosomes. The coding region of each member was 1014–2193 bp. Five of the members contained varied number of transcripts, but most of them had 5 exons and 4 introns. The encoded proteins had signal peptides localized mainly in the inner and outer membranes. The MaGDSLs had 3 tandem repeat clusters on chromosomes 4 and 8, 6 tandem repeat pairs on chromosomes 1, 6, 7, 8, 9, and 10, and 22 fragment repeat pairs on all except chromosome 11. The expressions of MaGDSLs in banana leaves and roots were highly variable with individual members regulated by high and low temperature stresses as well as the blast fungus. Five members (i.e., MaGDSL4-5, 8-1, 8-12, 9-4, 9-5) were repressed, but MaGDSL2-1 and MaGDSL6-8 induced, by high- or low-temperature exposure, while MaGDSL4-1 and MaGDSL11-1 regulated by low temperature and FocTR4, MaGDSL5–8 responded only to low temperature, MaGDSL2-2 and MaGLP10-5 sensitive to various treatments, and MaGDSL1-1 highly expressed in the roots and pollens.
      Conclusion   MaGDSLs might play an important role in the growth and development of banana plants. Some of the members responded specifically to certain biotic and/or abiotic stresses.

     

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