• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

周年生长特性(大小年)下毛竹根际细菌和内生细菌群落结构及其多样性特征

The Community Structure and Diversity Characteristics of Rhizosphere Bacteria and Endophytic Bacteria in Phyllostachys edulis under Annual Growth Characteristics (On and Off Years)

  • 摘要:
      目的  研究大小年毛竹林毛竹根际细菌和内生细菌群落多样性及其结构差异。
      方法  采集I度、II度和IV度的大年和小年毛竹林中毛竹的竹鞭、鞭根、根际土壤和林间土壤,提取样本基因组DNA,利用Illumina高通量测序技术分析毛竹根际细菌和内生细菌群落结构多样性。
      结果  各组样本总共鉴定出31个门、49个纲、108个目、212个科、472个属细菌。从优势菌群及丰度来看,大年竹鞭和鞭根的优势菌纲为α-变形菌纲,优势菌目为根瘤菌目;小年竹鞭和鞭根的优势菌纲为γ-变形菌纲,优势菌目为芽孢杆菌目。在门水平上,大年竹鞭样本放线菌门的丰度高于小年竹鞭样本,大年毛竹鞭根酸杆菌门和变形菌门的丰度大于小年毛竹鞭根样本,厚壁菌门和拟杆菌门的丰富度小于小年毛竹鞭根样本。在纲和目水平上,大年竹鞭和鞭根样本与小年样本相比较,主要优势菌群为弗兰克氏菌目和α-变形菌纲下属的根瘤菌目。在科水平上,大年毛竹鞭根样本在黄杆菌科的丰度都大于小年样本。在属水平上,大年毛竹鞭根样本在慢生根瘤菌属的丰度大于小年毛竹鞭根样本,而大年毛竹竹鞭和鞭根样本细菌在伯克氏菌科的丰度都低于小年毛竹竹鞭和鞭根样本。从多样性来看,大小年毛竹根际土壤在各水平的细菌群落组成上差异不大,但根际细菌的多样性和丰度高于林间土壤。
      结论  毛竹的竹龄及大小年更替对根际细菌群落多样性的影响不大,根际细菌群落具有更高的多样性。大小年毛竹竹鞭和鞭根内生细菌在主要类群上有明显的不同。

     

    Abstract:
      Objective  To study the diversity and structural differences of rhizosphere bacteria and endophytic bacterial communities in Phyllostachys edulis forests during on and off years.
      Methods   Samples of rhizomes and rhizomes roots as well as rhizosphere soils of degree I, degree II and degree IV P. edulis and non-rhizosphere soils were collected in the on and off years. Genomic DNA was extracted from samples, and Illumina high-throughput sequencing technology was used to analyze the diversity of rhizosphere bacteria and endophytic bacterial communities in P. edulis.
      Results  A total of 31 phyla, 49 classes, 108 orders, 212 families, and 472 genera were identified. The dominant phyla in the on-year P. edulis rhizomes and rhizomes roots were α-Amastigotes, and the dominant order Rhizobia. In the off-year specimens, the dominant phylum was γ-Amastigotes, and the dominant order Bacillariophyceae. At phylum level, the abundance of Actinobacteria was higher in the on-year than in off-year rhizomes; and those of Acidobacteria and Methylobacteria were greater in the on-year than in the off-year rhizomes roots; and those of Firmicutes and Bacteroidetes were less in the on-year than in the off-year rhizomes roots. At class and order levels, the dominants included Frankiaceae and Rhizobia of α-Amastigotes in the on-year rhizomes and rhizomes roots as compared with the off-year samples. At the family level, the abundance of Flavobacteriaceae in the rhizomes root of the on-year was greater than that in the off-year samples. At the genus level, the abundance of Bradyrhizobium in the rhizomes root of on-year was greater than that in off-year. However, the abundance of Burkholderiaceae was lower of on-year than off-year. The rhizosphere soil at the forest in either on or off years did not differ significantly on bacterial diversity, but it was higher on the diversity and richness than the non-rhizosphere soil.
      Conclusion   The rhizosphere bacterial community at a P. edulis forest appeared to be more diverse than the non-rhizosphere, although the diversity was not significantly altered between the years of on and off on the P. edulis growth. The dominant bacteria in the rhizomes and rhizomes roots of the plants differed significantly during the on and off years.

     

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