• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

锦葵科作物SSR标记在玫瑰茄中的通用性分析

Universality of Simple Sequence Repeat (SSR) Markers from Malvaceae plants to Roselle (Hibiscus sabdariffa L.)

  • 摘要:
      目的  丰富玫瑰茄(Hibiscus sabdariffa L.)SSR分子标记的种类和数量,验证锦葵科作物SSR标记在玫瑰茄中的通用性,进而分析玫瑰茄的遗传多样性。
      方法  选取锦葵科红麻、棉花、黄秋葵和木槿等4种作物共62对SSR引物(木槿17对,其他各15对),对8份不同来源的玫瑰茄种质进行多态性分析。
      结果  62对SSR引物中有58对具有通用性,占比为93.5%;通用性引物中有48对具有多态性,占比为82.8%;这些引物共扩增出246条条带,其中多态性条带239条,占比97.2%。同时,棉花有14对SSR引物具有多态性,多态性引物比率最高,达86.7%;其次是木槿,有82.4%的引物具有多态性,且其引物多态信息含量值(PIC)最高,为0.685;而黄秋葵和红麻多态性引物比率较低,分别为73.3%和66.7%。另外,聚类分析结果表明,在相似系数 0.49处可将 8 份玫瑰茄种质分为3个各具特点的亚类,其中19FZ-76被单独聚为一类,表明这一种质与其他7份种质亲缘关系最远,遗传差异最大,聚类结果与其表型性状表现一致;而来自缅甸的19FZ-74和漳州本地种遗传相似系数最高,说明这两份种质的亲缘关系较近,遗传差异较小,表明我国福建种植的玫瑰茄品种与东南亚的品种有较近的血缘关系,有可能从东南亚引种而来。
      结论  锦葵科作物的SSR引物在玫瑰茄中具有较好的通用性,筛选出的SSR标记可为玫瑰茄品种鉴定、亲缘关系分析、遗传图谱构建等遗传学研究提供可靠方法。

     

    Abstract:
      Objective  Universality of simple sequence repeat (SSR) markers of members of Malvaceae family and roselle herbal plants was examined to extend the genetic information bank.
      Method   A total of 62 pairs of SSR primers were selected from Hibiscus cannabinus, Gossypium spp, Hibiscus esculentus L, and Hibiscus syriacus L. of Malvaceae family. They included 17 pairs from rosemallow and 15 pairs from each of the other crops to compare for polymorphism with those of 8 accessions of Hibiscus sabdariffa L. germplasms.
      Result   Of the 62 SSR primers, 58, or 93.5%, were found common and 48, or 82.8%, polymorphic between the two groups. And out of 246 bands amplified, 239, or 97.2%, were polymorphic. Among the Malvaceae family members, cotton had 14 primer pairs polymorphic at the highest rate of 86.7%, while the rate with rosemallow primers 82.4%, with okra primers 73.3%, and with kenaf primers 66.7%. The PIC of rosemallow primers was the highest at 0.685 among all. A cluster analysis classified the 8 roselle accessions into 3 groups at a similarity coefficient of 0.49. The strain, 19FZ-76, was clustered by itself in the genetic relationship significantly far from other accessions that was reflected by the phenotypic traits as well. The greatest genetic similarity coefficient was observed in the 19FZ-74 cultivars from Myanmar and Zhangzhou, indicating a close genetic relationship of the two accessions and the likely origin of the roselle in Fujian.
      Conclusion   The SSR primers of Malvaceae plants including roselle showed a certain universality. The selected markers could provide a reliable venue for genetic studies, such as variety identification, relationship analysis, and map construction on the herbal plant.

     

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