• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

茶树炭疽菌N425全基因组测序与基因功能注释

Sequence and Annotation of Colletotrichum fructicola N425 Genome on Tea Plant

  • 摘要:
      目的  对茶树炭疽菌N425进行全基因组测序和基因功能注释并从中初筛出致病相关基因。
      方法  通过Illumina HiSeq2500 PE150平台对N425菌株进行全基因组测序和组装,并利用NR、KEGG、KOG等功能基因数据库进行基因预测和功能注释。
      结果  茶树炭疽菌N425基因组全长约56.3 Mbp,G+C含量为53.2%,共预测出10 157个蛋白编码基因和若干各类非蛋白编码序列。其中,1 356个基因在病原与宿主互作数据库(PHI)中得到注释,包括140个注释为致病力丧失的基因;720个基因在碳水化合物酶数据库(CAZy)中得到注释;302个基因被预测为次生代谢物相关基因。这些基因中有涉及cAMP-PKA、MAPK等信号通路以及降解宿主细胞壁等致病相关过程,是潜在的致病相关基因。
      结论  本研究成功获得茶树炭疽菌N425全基因组序列和基因功能注释,并从中挖掘出潜在致病相关基因,为后续展开对茶树炭疽菌侵染茶树的致病分子机制研究奠定基础。

     

    Abstract:
      Objective  Sequence and annotation of Colletotrichum fructicola N425 genomefrom a diseased tea plant were determined, and primary virulence-related genes identified.
      Method   Whole genome of N425 was sequenced and assembled using the Illumina HiSeq2500 PE150 platform. Predicted protein structure and functional annotation of the genes were obtained using the NR, KEGG, and KOG databases.
      Results   The genome was approximately 56.3 Mbp in length with 53.2% of G+C, 10 157 protein-coding genes, and several types of non-protein coding sequences. Of the genes, 1 356 were annotated in the PHI database that included 140 as the loss of pathogenicity, 720 in the CAZy database, and 302 related to the secondary metabolites. Some of these genes were involved in the cAMP-PKA and MAPK cascade signaling pathways as well as other pathogenic processes, such as host cell wall degradation, which could be responsible for the virulence on tea plants.
      Conclusion   The sequence and annotation of whole C. fructicola N425 genome were successfully obtained, and probable virulence-related genes identified.

     

/

返回文章
返回