Genetic diversity analysis of Paris polyphylla Sm. and construction of primary core germplasm
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摘要:目的
七叶一枝花因市场需求增长,但资源供不应求,出现野生资源过度开采,种质混杂现象,为此构建其初级核心种质,为优良基因挖掘、种质改良与保护提供理论支持。
方法通过15条ISSR(Inter-Simple Sequence Repeat)引物对60份种质进行遗传多样性分析,采用Structure软件进行群体结构分析,使用NTSYSpc2.10e软件进行聚类分析、主成分分析进行验证,同时基于Structure分组-比例取样法构建初级核心种质,并对初级核心种质的构建效果进行评价。
结果15条引物共扩增出102个位点,多态位点率为97.05%,平均Shannonʹs信息指数(I)、Neiʹs遗传多样性指数(He)分别为
0.5022 、0.3328 ,表明种质具有丰富的遗传多样性;Structure软件分析结果显示,群体数K值为3是较为合适的分类选择。主坐标分析与群体结构分析结果一致,但聚类分析与群体结构略有不同,其结果均与地域分布相关;采用Structure分组-比例取样法构建初级核心种质,从7种抽样比例中筛选,筛选得到12份初级核心种质,占原种质的20%,其Shannon's信息指数(I)、Nei's遗传多样性指数(He)、有效等位基因数(Ne)保留率分别为104.22%、106.43%、107.71%;t检验与主坐标分析表明,所构建的核心种质不仅具有丰富的遗传多样性,且在原种质中也呈现出均匀分布的特点。结论七叶一枝花具有丰富的遗传多样性,所构建的初级核心种质能够有效代表原种质的遗传多样性。
Abstract:ObjectiveDue to the increasing market demand for Paris polyphylla, the resource supply cannot meet the demand, leading to over-exploitation of wild resources and genetic admixture. To address this issue, we aimed to construct an initial core germplasm collection to provide theoretical support for gene mining, germplasm improvement, and conservation.
MethodsGenetic diversity analysis was conducted using 15 ISSR primers on 60 accessions. Population structure analysis was performed using Structure software, cluster analysis using NTSYSpc2.10e software, and principal component analysis (PCA) for validation. An initial core germplasm was constructed based on the grouping-proportional sampling method derived from Structure analysis, and its effectiveness was evaluated.
ResultsThe 15 ISSR primers amplified a total of 102 loci, with a polymorphic locus rate of 97.05%. The average Shannon's information index (I) and Nei's genetic diversity index (He) were
0.5022 and0.3328 , respectively, indicating rich genetic diversity within the germplasm. Structure analysis suggested that K = 3 was the optimal number of subpopulations. Principal coordinate analysis (PCoA) results were consistent with population structure analysis, although cluster analysis showed slight differences, which were correlated with geographic distribution. Using the grouping-proportional sampling method, 12 accessions were selected from seven different sampling proportions, representing 20% of the original germplasm. The retention rates of Shannon's information index (I), Nei's genetic diversity index (He), and effective allele number (Ne) in the core germplasm were 104.22%, 106.43%, and 107.71%, respectively. The t-test and principal coordinate analysis (PCoA) demonstrated that the constructed core germplasm not only exhibits rich genetic diversity but also shows a uniform distribution within the original germplasm collection.ConclusionParis polyphylla exhibits significant genetic diversity, and the constructed initial core germplasm effectively represents the genetic diversity of the original germplasm.
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鸭瘟(Duck plague,DP),又名鸭病毒性肠炎(Duck viral enteritis,DVE),是由鸭瘟病毒(duck plague virus,DPV)引起的鸭、鹅、雁及其他雁形目禽类的急性、败血性、高度致死性传染病,是危害养鸭业的重要疾病之一,该病流行广泛,传播迅速,发病率和死亡率高,曾给世界各国造成巨大的经济损失[1-3]。
2015年以来,福建省不同日龄未免疫鸭瘟疫苗的番鸭群均不同程度发生疑似鸭瘟疫情,病程急、病鸭流泪、肿头、拉黄绿色稀便,剖检见肝脏肿大质脆边缘坏死、肠黏膜及淋巴环出血、食道和泄殖腔出血等,为明确其病原并采取有效控制措施减少损失,本课题组采集60~120日龄疑似鸭瘟病死番鸭的肝脾胰等组织进行病原分离,应用单抗间接免疫荧光抗体技术,PCR技术和动物回归试验等鉴定,现将结果报道如下。
1. 材料与方法
1.1 禽胚及细胞
番鸭胚和番鸭均购自福州山区健康番鸭场,番鸭胚成纤维细胞(MDEF)的制备按文献[1]的方法进行。
1.2 单克隆抗体及试剂盒
抗鹅细小病毒(GPV)单抗、抗雏番鸭细小病毒(MPV)单抗、抗鸭呼肠孤病毒(MDRV)单抗、抗鸭源副粘病毒(DPMV)和禽坦布苏病毒(TUMV)单抗等均为本课题组制备并保存;鸭瘟病毒荧光PCR检测试剂盒购于北京生科尚仪科技有限公司。
1.3 病料来源及处理
取疑似病死番鸭的肝、脾、胰腺等组织,剪碎研磨,以Hank′s液制成1:5匀浆,加双抗各1 000 U,4℃过夜,低温冻融3次,7 000 r·min-1离心10 min,将上清液经直径为0.22 μm的微孔滤膜过滤,收集滤液供病毒分离和核酸抽提用。
1.4 病毒分离
取长成单层的MDEF细胞,弃去营养液,接种上述病料滤液,37℃吸附1 h,倾去吸附液,以灭菌Hank′s冲洗3次后,加足量维持液(0.5%HL-2%小牛血清)。并设置未接种病料的细胞对照组,37℃继续培养,逐日观察细胞病变至7 d,置-20℃冻融3次,收获细胞。如上反复传代,观察病变情况。
1.5 病毒鉴定
1.5.1 血凝特性(HA)测定
按殷震法[1]进行,在37℃、pH 7.2的PBS缓冲液中测定分离毒对鸡、鸽红细胞的血凝性。
1.5.2 间接免疫荧光试验(IFA)鉴定
(1) 冰冻切片制备:取临床自然病鸭或人工感染病死鸭肝、脾、胰腺等组织在冰冻切片机中切成6 μm厚的薄片,冷丙酮固定15 min,晾干备用。
(2) 感染病毒的细胞板制备:将分离毒DP1d3适当稀释后接种于已成长单层的MDEF 96孔细胞培养板,于37℃、6%CO2培养,当细胞病变达30%时,弃去培养液,甩干。每孔加100 μL甲醇(预置-20℃)于4℃固定30 min,弃甲醇,用0.85%生理盐水洗涤3次,每孔100 μL, 每次5 min,甩干,置-20℃保存供IFA试验。
(3) IFA染色及观察:取上述冰冻切片或感染病毒的细胞板,按常规方法[4]分别以抗GPV、MPV、DRV、DPMV和TUMV单抗为一抗、羊抗鼠IgG-FITC为二抗进行间接荧光抗体试验检测,置荧光显微镜下观察,以出现亮绿色特异性荧光判为阳性。
1.5.3 荧光定量PCR鉴定
4份第3代细胞分离毒(DPVfj1、DPVfj2、DPVfj3、DPVfj4) 用DNA提取试剂盒提取病毒核酸,按照鸭瘟病毒荧光PCR检测试剂盒说明书操作,在实时荧光定量PCR仪(eppendorf公司)进行检测。并设阴阳性对照。
1.5.4 PCR及产物序列鉴定
第3代细胞毒(DP1d3) 提取核酸。根据已发表的鸭瘟病毒(JQ673560) gJ蛋白基因序列,设计了如下引物:gJ1:5′-atgtatacag acgttacggtc-3′,gJ2:5′-tcatac catacaaaggcatag-3′。利用TAKARA公司试剂进行PCR扩增,将回收的PCR产物与pMD-18T载体连接后转化到感受态细胞,进行重组质粒的筛选。鉴定后的重组质粒由TAKARA公司进行序列测定,应用分析软件对gJ基因进行分析和比较。
1.5.5 动物回归试验
30日龄健康雏番鸭15羽随机分为2组,其中健康对照组5羽,每羽腿肌注射正常MDEF细胞0.1 mL;攻毒组10羽,每羽腿部肌肉注射第3代细胞培养毒(DP1d3)0.1 mL。隔离饲养,每天观察并记录试验鸭发病和死亡情况,并从病死鸭中分离病毒。
1.5.6 番鸭同居感染试验
在1.5.2动物回归试验中,当攻毒组人工感染后第4 d出现死亡鸭时,移入10羽5日龄健康番鸭与攻毒组鸭同居饲养,每天观察并记录试验鸭发病和死亡情况,并从病死鸭中分离回收病毒。
1.5.7 病毒对鹅的致病性试验
将DP1d3经口服和腿部肌肉注射途径人工感染17日龄健康雏鹅6羽,0.8 mL·羽-1,每天观察并记录感染鹅发病和死亡情况,并从病死鹅中分离病毒。
2. 结果与分析
2.1 病毒分离结果
6份65~120日龄疑似病死番鸭肝脾组织匀浆上清,接种MDEF单层细胞培养并盲传至第3代,其中4份出现细胞病变,表现为局灶性细胞圆缩、随后病变范围逐渐扩大并脱落,部分细胞融合形成巨融合细胞(图 1)。随着传代代次增加,出现病变的时间亦随之缩短。暂将这4株病毒命名为DPVfj1、DPVfj2、DPVfj3、DPVfj4。
2.2 病毒鉴定结果
2.2.1 血凝性测定结果
血凝试验显示分离毒不能凝集鸡、鸽红细胞,提示分离毒无血凝特性。
2.2.2 IFA试验
人工病死番鸭肝、脾、胰腺等组织的冰冻切片和感染病毒的细胞板分别经抗GPV、MPV、MDRV、DPMV和TUMV单抗的IFA,均未出现特异性荧光,结果均为阴性。
2.2.3 荧光定量PCR鉴定结果
4份分离毒应用鸭瘟病毒荧光PCR检测试剂盒进行鉴定,扩增曲线如图 2所示,分离毒DPVfj1、DPVfj2、DPVfj3、DPVfj4、阳性对照、阴性对照CT值分别为19.32、19.45、24.9、22.8、21.71、none,判定4份分离毒均为鸭瘟病毒核酸阳性。
2.2.4 PCR及产物序列鉴定结果
对PCR产物的阳性重组质粒进行正、反向测序,得到长度为1 173 bp鸭瘟病毒gJ基因部分序列。经BLAST分析,该序列与多株鸭瘟病毒gJ蛋白基因序列(KJ549663、KF693236、JQ673560、KF487736、JQ647509、EU082088、FJ222443、JF999965、KF263690) 相似度均大于99%(图 3)。PCR产物序列进一步证实分离毒为鸭瘟病毒。
2.2.5 动物回归试验结果
人工感染组番鸭于接种分离毒后3 d出现精神沉郁,食欲废绝,渴欲增加,行走迟缓、喜卧等症状,第4 d出现死亡,10羽番鸭死亡6羽,第5 d接种鸭全部死亡,发病率和死亡率均为100%。剖检病死鸭出现与临床自然感染一致的病变,肝脏略肿大质脆出血、脾脏略肿大呈瘀黑色,特征性病变表现为肠黏膜出血环及出血点和泄殖腔出血点(图 4),并从病死鸭肝脾匀浆中分离到病毒。动物回归试验表明分离毒是该病的病原。
2.2.6 番鸭同居感染试验结果
5日龄番鸭与病鸭同居后第4 d开始发病,第6 d出现死亡,至第8 d 10羽番鸭死亡3羽,继续观察到25 d,发病率和死亡率均为30%,并从病死鸭肝脾匀浆中分离到病毒。同居感染试验结果表明直接接触是该病传播途径之一。
2.2.7 对鹅的致病性试验结果
17日龄健康雏鹅以细胞毒原液DP1d3(0.8 mL·羽-1)经口服和肌注途径人工感染后,每天观察至28 d,结果人工感染鹅未出现临床症状且生长发育良好,初步表明该分离毒对鹅不易感,无致病性。
3. 讨论
鸭瘟由Baudet于1923年首次在荷兰发现,随后陆续在许多养鸭国家暴发和流行[1-4]。该病病原是鸭瘟病毒,属疱疹病毒科a疱疹病毒亚科,核酸为线状双股DNA。在我国该病多见于成年种鸭和蛋鸭,其临床特征性症状是流泪,眼睑肿胀,两脚发软不能站立,下痢,头颈部肿大,俗称“大头瘟”,剖检可见食道和泄殖腔黏膜出血并伴有黄褐色假膜覆盖[4]。至今全国各地均有鸭瘟流行的报道,鸭瘟仍然是目前阻碍我国养鸭业发展的重要传染病之一[5-10]。
本研究应用MDEF从疑似鸭瘟病毒自然感染病死番鸭中分离到病毒,分离毒无血凝活性,能致MDEF产生细胞病变,经荧光定量PCR、gJ蛋白基因PCR及其产物序列测定均证实分离毒属于鸭瘟病毒,人工感染对鹅不易感,无致病性;对雏番鸭具有很强的致病性,发病率和死亡率均高达100%,动物回归能复制出与自然感染一致的病症,并能回收到病毒。提示该分离毒为鸭瘟病毒强毒株,但其全基因序列还有待进一步测定。
由于我省有十多年未发生鸭瘟疫情,养殖企业也不同程度忽视了鸭瘟疫苗免疫。然而2015年以来,我省不同日龄不同品种未免疫鸭瘟疫苗的鸭群均不同程度发生该病,发病率和病死率高,给养鸭业敲响了警钟。建议在加强日常饲养管理和生物安全措施的同时,应对鸭瘟疫苗的免疫予以足够重视,可根据疫区流行情况适当调整免疫程序(如疫源地在10日龄首免、间隔20 d加强免疫1次)。
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图 6 保留种质与初级核心种质主坐标的分布
保留种质指的是在构建核心种质后未被选入核心种质库的剩余种质资源
Figure 6. Distribution of the main coordinates of primary core germplasm and preserved germplasm
The retained germplasm refers to the portion of the original germplasm collection that remains after the construction of the core collection, i.e., those accessions not selected for inclusion in the core germplasm.
表 1 七叶一枝花60份种质资源信息
Table 1 Information on germplasm resources of Paris polyphylla SM.
编号
Number种源地
Provenance经纬度与海拔
Latitude,Longitude,and Elevation1 福建省漳州市南靖县和溪镇
Hexi Township, Nanjing County, Zhangzhou City, Fujian Province24°52'28"N,117°15'15"E,
594 m2 福建省南平市邵武市肖家坊镇
Xiaojiafang Town, Shaowu City, Nanping City, Fujian Province27°09'44"N,117°15'50"E,
471 m3 福建省南平市光泽县桃州基地寨里镇
Zhaili Township, Taizhou Base, Glossy County, Nanping City, Fujian Province27°06′53″N,117°15'13"E,
456 m4 福建省南平市光泽县桃州基地寨里镇
Zhaili Township, Taizhou Base, Glossy County, Nanping City, Fujian Province27°06′53″N,117°15'13"E,
456 m5 福建省南平市光泽县华侨乡
Huaqiao Township, Glossy County, Nanping City, Fujian Province27°33'36"N,117°12'50"E,
372 m6 福建省南平市光泽县崇仁乡
Chongren Township, Glossy County, Nanping City, Fujian Province27°35'58"N117°21'32"E,
332 m7 福建省南平市光泽县华侨乡
Huaqiao Township, Glossy County, Nanping City, Fujian Province27°33'53"N,117°11'54"E,
400 m8 福建省南平市光泽县司前乡
Sizian Township, Glossy County, Nanping City, Fujian Province27°54'18"N,117°31'43"E,
440 m9 福建省南平市光泽县鸾凤乡
Luanfeng Township, Glossy County, Nanping City, Fujian Province27°33'07"N,117°20'34"E,
334 m10 福建省南平市光泽县华侨乡
Huaqiao Township, Glossy County, Nanping City, Fujian Province27°33'40"N117°11'58"E,
405 m11 福建省泉州市南安市水头镇
Shuitou Town, Nan'an City, Quanzhou City, Fujian Province24°42'54"N,118°20'06"E,
370 m12 福建省泉州市南安市眉山乡
Meishan Township, Nan'an City, Quanzhou City, Fujian Province25°05'26"N,118°17'58"E,
661 m13 福建省漳州市南靖县梅林镇
Meilin Township, Nanjing County, Zhangzhou City, Fujian Province24°41'59"N,117°04'07"E,
450 m14 福建省漳州市南靖县和溪镇
Hexi Township, Nanjing County, Zhangzhou City, Fujian Province24°52'32"N,117°12'36"E,
466 m15 福建省南平市邵武市大竹镇
Dazhu Town, Shaowu City, Nanping City, Fujian Province27°65'32"N,117°15'13"E,
471 m16 福建省三明市大田县奇韬镇
Qitao Town, Datian County, Sanming City, Fujian Province26°03'27"N,117°52'29"E,
519 m17 福建省三明市三元区中村乡
Zhongcun Commune, Sanyuan District, Sanming City, Fujian Province26°7′18″N,117°43′21″E,
933 m18 福建省三明市三元区中村乡
Zhongcun Commune, Sanyuan District, Sanming City, Fujian Province26°08'48"N,117°42'32"E,
542 m19 福建省龙岩市武平县下坝乡
Xiaba Township, Wuping County, Longyan City, Fujian Province24°52'28"N,116°03'13"E,
387 m20 福建省南平市光泽县华侨乡
Huaqiao Township, Glossy County, Nanping City, Fujian Province27°32'39"N,117°12'10"E,
378 m21 福建省南平市光泽县华侨乡
Huaqiao Township, Glossy County, Nanping City, Fujian Province27°33'13"N,117°12'20"E,
387 m22 福建省南平市光泽县华侨乡
Huaqiao Township, Glossy County, Nanping City, Fujian Province27°33'42"N,117°13'16"E,
462 m23 福建省南平市光泽县止马镇
Zhima Town, Glossy County, Nanping City, Fujian Province27°54'58"N,117°10'60"E,
450 m24 福建省南平市光泽县鸾凤乡
Luanfeng Township, Glossy County, Nanping City, Fujian Province27°32'31"N,117°20'36"E,
338 m25 福建省南平市邵武市肖家方镇
Xiaojiafang Town, Shaowu City, Nanping City, Fujian Province27°09'21"N,117°17'53"E,
386 m26 云南文山壮族苗族自治州富宁县归朝镇
Guichao Township, Funing County, Wenshan Zhuang and Miao Autonomous Prefecture, Yunnan Province23°61'43"N,105°81'02"E,
728 m27 云南文山壮族苗族自治州砚山县平远镇
Pingyuan Township, Yanshan County, Wenshan Zhuang and Miao Autonomous Prefecture, Yunnan Province23°44'88"N,104°17'48"E, 1572 m28 云南省昭通市水富市太平镇
Taiping Town, Shufu City, Zhaotong City, Yunnan Province28°54'12"N,104°20'45"E, 1017 m29 云南省普洱市西盟佤族自治县中淉镇
Zhongwang Township, Ximeng Wa Autonomous County, Pu'er City, Yunnan Province22°48'70"N,99°43'32"E, 1395 m30 云南省曲靖市富源县十八莲山镇
Shibalianshan Township, Fuyuan County, Qujing City, Yunnan Province25°04'39"N,104°44'32"E, 1720 m31 湖北省宜昌市五峰县牛庄乡
Niuzhuang Township, Wufeng County, Yichang City, Hubei Province30°13'47"N,110°22'00"E, 1789 m32 湖北省黄冈市蕲春县狮子镇
Lion Town, Herb County, Huanggang City, Hubei Province30°13'54"N,115°45'43"E,
529 m33 湖北省恩施土家族苗族自治州恩施市芭蕉侗族乡
Basho Dong Township, Enshi Tujia and Miao Autonomous Prefecture, Hubei Province30°06'54"N,109°24'11"E,
712 m34 湖北省宜昌市兴山县水月寺镇
Guishan Township, Macheng City, Huanggang City, Hubei Province31°13'30"N,111°01'50"E, 1112 m35 湖北省宜昌市兴山县水月寺镇
Guishan Township, Macheng City, Huanggang City, Hubei Province31°13'33'N,111°01'54"E, 1150 m36 湖北省黄冈市麻城市龟山镇
Guishan Township, Macheng City, Huanggang City, Hubei Province31°04'36"N,115°11'23"E,
382 m37 湖北省恩施市土家族苗族自治州咸丰县高乐山镇
Gaoleshang Township, Xianfeng County, Tujia-Miao Autonomous Prefecture, Enshi City, Hubei Province29°40'41"N,109°08'41"E,
744 m38 四川省乐山市峨边县新林镇
Xinlin Town, Ebian County, Leshan City, Sichuan Province29°10'27"N,103°15'12"E,
851 m39 四川省达州市大竹县团坝镇
Tuanba Township, Dazhu County, Dazhou City, Sichuan Province30°38'30"N,107°02'56"E,
835 m40 四川省阿坝藏族羌族自治州汶川县水磨镇
Shuimo Township, Wenchuan County, Aba Tibetan and Qiang Autonomous Prefecture, Sichuan Province30°56'05"N,103°25'33"E,
919 m41 四川省阿坝藏族羌族自治州汶川县水磨镇
Shuimo Township, Wenchuan County, Aba Tibetan and Qiang Autonomous Prefecture, Sichuan Province30°56'05"N,103°25'33"E,
922 m42 四川省阿坝藏族羌族自治州汶川县水磨镇
Shuimo Township, Wenchuan County, Aba Tibetan and Qiang Autonomous Prefecture, Sichuan Province30°56'04"N,103°25'29"E,
903 m43 四川省成都市崇州县怀远镇
Huaiyuan Town, Chongzhou County, Chengdu City, Sichuan Province30°41'54"N,103°32'00"E,
615 m44 安徽省安庆市潜山县五庙乡
Wumiao Township, Qianshan County, Anqing City, Anhui Province30°38'50"N,116°17'37"E,
406 m45 安徽省安庆市太湖县北中镇
Beizhong Township, Taihu County, Anqing City, Anhui Province30°39'27"N,115°49'54"E,
364 m46 安徽省六安市霍山县磨子潭镇
Mazitan Township, Huoshan County, Lu'an City, Anhui Province31°14'06"N,116°19'40"E,
318 m47 浙江省衢州市常山县芳村镇
Fangcun Town, Changshan County, Quzhou City, Zhejiang Province29°02'16"N,118°37'03"E,
350 m48 浙江省丽水市遂昌县龙洋乡
Longyang Township, Suichang County, Lishui City, Zhejiang Province28°18'04"N, 118°56'57"E
764 m49 浙江省丽水市龙泉市竹垟畲族乡
Zhuyang She Township, Longquan City, Lishui City, Zhejiang Province28°02'57"N,118°56'53"E,
468 m50 浙江省丽水市龙泉市宝溪乡
Baoxi Township, Longquan City, Lishui City, Zhejiang Province27°73'97"N,118°71'14"E,
581 m51 陕西省安康市旬阳市赵湾镇
Zhaowan Town, Xunyang City, Ankang City, Shaanxi Province32°99'72"°N,109°16'26"E,
780 m52 陕西省汉中市宁强县二郎坝镇
Erlangba Township, Ningqiang County, Hanzhong City, Shaanxi Province32°67'12"N,106°09'47"E, 1205 m53 湖南省益阳市安化县东坪镇
Dongping Town, Anhua County, Yiyang City, Hunan Province28°21'74"N,111°04'75"E,
408 m54 湖南省张家界市慈利县龙潭河镇
Longtanhe Township, Cili County, Zhangjiajie City, Hunan Province29°24'15"N,111°07'18"E,
280 m55 广西省桂林市阳朔县兴坪镇
Xingping Town, Yangshuo County, Guilin City, Guangxi Province24°63'69"N,110°22'27"E,
426 m56 广西省玉林市福绵区成均镇
Chengjun Town, Fumian District, Yulin City, Guangxi Province22°57'32"N,109°99'34"E, 1109 m57 贵州省毕节市纳雍县水东镇
Shuitong Township, Nayong County, Bijie City, Guizhou Province27°12'58"N,105°12'66"E, 1651 m58 广东省清远市连州市三水瑶族乡
Sanshui Yao Township, Lianzhou City, Qingyuan City, Guangdong Province25°08'35"N,112°16'03"E,
707 m59 河南省三门峡市卢氏县双槐树乡
Shuanghuishu Township, Lushi County, Sanmenxia City, Henan Province33°84'66"N,110°89'22"E, 1007 m60 江西省吉安市井冈山市茅坪乡
Maoping Township, Jinggangshan City, Jis'an City, Jiangxi Province26°63'17"N,114°06'66"E,
800m表 2 15条ISSR分子标记的引物信息
Table 2 Primer information for 15 ISSR molecular markers
引物编号
Primer引物序列(5ʹ-3ʹ)
primer(5ʹ-3ʹ)退火温度/ ℃
Annealing temperature/ ℃UBC811 GAGAGAGAGAGAGAGAC 55.3 UBC824 TCTCTCTCTCTCTCTCG 53.0 UBC834 AGAGAGAGAGAGAGAGYT 55.8 UBC835 AGAGAGAGAGAGAGAGYC 56.3 UBC844 CTCTCTCTCTCTCTCTRC 52.3 UBC853 TCTCTCTCTCTCTCTCRT 52.0 UBC855 ACACACACACACACACYT 57.0 UBC864 ATGATGATGATGATGATG 51.2 UBC866 CTCCTCCTCCTCCTCCTC 63.2 UBC873 GACAGACAGACAGACA 51.9 UBC874 CCCTCCCTCCCTCCCT 60.8 UBC878 GGATGGATGGATGGAT 48.5 UBC880 GGAGAGGAGAGGAGAGGAGAGGAGA 55.0 UBC881 GGGTGGGGTGGGGTGGGGTGGGGTG 54.3 UBC889 DBDACACACACACACAC 52.5 表 3 15条ISSR引物扩增结果及七叶一枝花遗传多样性分析
Table 3 Amplification results of 15 ISSR primers and analysis of genetic diversity of Paris polyphylla Sm.
引物
Primer总带数
No.of bands多态性条带
Polymorphic
bands观测等位基因数
Observed number of
alleles (Na)有效等位基因数
Effective number of
alleles (Ne)Neiʹs遗传多样性指数
Nei's gene diversity
index (He)Shannonʹs信息指数
Shannon's information
index (I)UBC811 6 5 1.8333 1.4829 0.2567 0.3940 UBC824 6 5 1.8333 1.3750 0.2181 0.3557 UBC834 7 7 2.0000 1.6419 0.3804 0.5637 UBC835 9 9 2.0000 1.6246 0.3758 0.5598 UBC844 7 7 2.0000 1.6515 0.3831 0.5662 UBC853 6 6 2.0000 1.5484 0.3485 0.5299 UBC855 8 8 2.0000 1.5809 0.3434 0.5144 UBC864 7 7 2.0000 1.5979 0.3614 0.5424 UBC866 6 6 2.0000 1.4071 0.2694 0.4288 UBC873 6 6 2.0000 1.7446 0.4269 0.6163 UBC874 8 8 2.0000 1.4067 0.2837 0.4526 UBC878 8 8 2.0000 1.4375 0.2821 0.4424 UBC880 6 5 1.8333 1.6115 0.3143 0.4668 UBC881 6 6 2.0000 1.5130 0.3083 0.4682 UBC889 6 6 2.0000 1.8078 0.4410 0.6309 平均值 Average value 6.8 6.6 1.9666 1.5557 0.3328 0.5022 表 4 各群体Q值分布
Table 4 Distribution of Q-value of each population
类群
Group种群数量
Number of germplasmQ≤0.6 Q>0.6 Q≥0.8 Q≥0.9 Ⅰ 29(48.33%) 3(5.00%) 3(5.00%) 2(3.30%) 21(35.00%) Ⅱ 12 (20.00%) 1(1.70%) 1(1.70%) 1(1.70%) 9(15.00%) Ⅲ 19 (31.70%) 1(1.70%) 0(0.00%) 3(5.00%) 15(25.00%) 合计Total 60(100.00%) 5(8.40%) 4(6.70%) 6(10.00%) 45(75.00%) Q值表示个体属于某一类群的比例
The Q value represents the proportion of an individual belonging to a particular population表 5 不同抽样比例构建初级核心种质的遗传多样性
Table 5 Different sampling ratios were used to construct the genetic diversity of the primary core germplasm
抽样比例/%
Sampling
portion抽样数
Number of samples观测等位基因数
Observed number of
alleles (Na)有效等位基因数
Effective number of
alleles (Ne)Neiʹs遗传多样性指数
Nei's gene diversity
index (He)Shannonʹs信息指数
Shannon's information
index (I)多态性
位点
(PPL)多态性位点率
(PPB) /%抽样前
Before sampling60 1.9706 ±0.1698 a1.5557 ±0.2913 a0.3328 ±0.1341 a0.5022 ±0.1692 a102 100 40 24 1.9706 ±0.1698 a1.5976 ±0.2916 a0.3507 ±0.1317 a0.5233 ±0.1657 a99 97.06 35 21 1.9706 ±0.1698 a1.6019 ±0.2867 a0.3533 ±0.1292 a0.5267 ±0.1627 a99 97.06 30 18 1.9706 ±0.1698 a1.6076 ±0.2869 a0.3556 ±0.1288 a0.5295 ±0.1615 a99 97.06 25 15 1.9608 ±0.1951 a1.6100 ±0.2844 a0.3568 ±0.1291 a0.5302 ±0.1646 a98 96.08 20 12 1.9314 ±0.2541 a1.6134 ±0.3073 a0.3542 ±0.1428 a0.5234 ±0.1871 a98 96.08 15 9 1.9020 ±0.2988 a1.6036 ±0.3274 a0.3457 ±0.1551 a0.5098 ±0.2067 a92 90.20 10 6 1.8039 ±0.3990 b1.5704 ±0.3566 b0.3235 ±0.1799 a0.4730 ±0.2512 a83 81.37 同列数据中标有不同小写字母表示差异显著(P<0.05),相同小写字母表示组间差异不显著(P>0.05)
Different lowercase letters within the same column indicate significant differences (P < 0.05), while the same lowercase letters indicate no significant differences (P > 0.05) between groups.表 6 分子标记构建七叶一枝花资源初级核心种质
Table 6 The primary core germplasm based on the molecular marker of Paris polyphylla Sm. germplasm resources
地区来源
Geographic Origin初级核心种质份数
Primary core collection size编号
Number福建省
Fujian Province2 16、24 云南省
Yunnan Province2 29、30 湖北省
Hubei Province1 37 四川省
Sichuan Province1 39 安徽省
Anhui Province1 45 浙江省
Zhejiang Province2 48、50 陕西省
Shaanxi Province1 51 湖南省
Hunan Province1 54 广东省
Guangdong Province1 58 种质编号见表1
The germplasm number refers to Table 1.表 7 初级核心种质与原种质及保留种质之间t检验
Table 7 The t-test values between primary core germplasm and initial germplasm and reserve germplasm
种质
Collections样本数
Number of samples观测等位基因数
Observed number of
alleles (Na)有效等位基因
Effective number of
alleles(Ne)Neiʹs遗传多样性指数
Nei's gene diversity
index(He)Shannonʹs信息指数
Shannon's information
index(I)原种质OC 60 1.9706 1.5557 0.3328 0.5022 初级核心种质PCC 12 1.9314 1.6134 0.3542 0.5234 保留种质RC 48 1.9510 1.5207 0.3138 0.4767 t1 — 0.5061 0.5367 0.6190 0.6981 t2 — 0.6624 0.4302 0.4823 0.4885 t1为初级核心种质与原种质各遗传参数t检验值;t2为核心种质与保留种质各遗传参数t检验值。
t1.The value of genetic diversity parameters between primary core germplasm and initial germplasmt2. The value of genetic diversity parameters between core germplasm and reserve germplasm -
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