• 中文核心期刊
  • CSCD来源期刊
  • 中国科技核心期刊
  • CA、CABI、ZR收录期刊

火龙果热激转录因子HSF基因家族鉴定及生物信息学分析

Identification and Bioinformatics of Pitaya HSF Family

  • 摘要:
    目的 探究火龙果(Selenicereus spp.) 热激转录因子(heat shock transcription factors, HSF) 基因家族的生物学特性,为探明火龙果抵抗高温胁迫反应机制提供依据。
    方法 运用生物信息学手段,对火龙果 HSF 基因家族进行理化性质、Motif 分析、基因结构分析、基因结构域的预测、染色体定位、启动子分析和系统进化树分析等。并通过转录组数据和qPCR技术分析基因家族各成员在逆境胁迫的表达情况。
    结果 从火龙果基因组中鉴定出 13 个 HSF 基因家族成员。理化性质分析结果表明,其编码的热转录因子均为不稳定蛋白;基因结构分析显示,火龙果 HSF 基因家族大部分成员仅含一个内含子;系统进化树分析结果表明,火龙果 HSF 基因家族根据亲缘关系分为4类,Motif 分析结果也从侧面印证同一分支的基因具有相似或相同的保守基序;HSF 基因家族成员随机分布在火龙果的 6 条染色体中;其启动子中包含激素响应、逆境胁迫、植物生长发育调控和光响应等多种元件;基因结构域预测分析发现,火龙果 HSF 基因家族成员均含有特定的 HSF 结构域。基因表达分析表明,火龙果 HSF 基因的表达具有较强的时间与空间特异性;其中仅5个成员在枝条表达且表达趋势不同,HU05G00210.1和HU05G01887.1的表达量在24 h和48 h均显著升高,HU02G02398.1和HU10G01257.1在经过48 h高温处理后表达量才显著升高,而HU04G00163.1表达量则没有显著变化,体现了 HSF 基因对热胁迫的响应。
    结论 初步鉴定并验证了 HSF 基因家族成员参与了火龙果热胁迫反应过程,为进一步探究 HSF 基因家族成员在火龙果高温响应机制提供参考。

     

    Abstract:
    Objective Biological characteristics of the gene family related to heat shock transcription factors (HSFs) crucial in plant responses to high-temperature stress in pitaya were studied.
    Methods Bioinformatic tools were utilized to analyze the physicochemical properties, motifs, gene structure, domains, chromosome localization, promoters, and phylogenetic tree of the HSF family in Selenicereus spp. Transcriptome and qPCR were employed to determine the gene expressions under heat stress.
    Results Thirteen HSF members were identified from the genome. The encoded HSFs were all unstable proteins. Most members contained only one intron belonging to 4 classes of phylogenetics. The genes in the same branch possessed similar or identical conserved motifs and were randomly distributed in 6 chromosomes. Their promoters contained various elements related to the responses to hormone, stress, and light or plant growth and development regulation. The gene structure consisted of specific domains with temporally and spatially specific expressions. Gene expression analysis showed that the expression of pitaya HSF gene had strong temporal and spatial specificity; among them, only five members were expressed in branches with different expression trends, and the expression of HU05G00210.1 and HU05G01887.1 was significantly elevated at 24 h and 48 h, and the expression of HU02G02398.1 and HU10G01257.1 was not significantly elevated until the high temperature treatment of 48 h, while the expression of HU04G00163.1 did not change significantly, reflecting the response of HSF gene to heat stress.
    Conclusion This study identified and validated the involvement of HSF family of pitaya in response to heat stress.

     

/

返回文章
返回